
The Bee lab

PRINCIPLE INVESTIGATORS
WORK EXPERIENCE
EDITORIAL ASSOCIATION
Referee:
Methods in Ecology & Evolution, Molecular Ecology Resource, GigaScience, BMC Genomics, Biological Conservation, Plos One, Communications Biology
EDUCATION
Hunan Normal University, China
Department of Animal Science, School of Life Sciences
2007.9-2010.6
Ms.
Hunan Normal University, China
Department of Animal Science, School of Life Sciences
2003.9-2007.6
Bs.
SELECTED PUBLICATIONS
Evolution and Ecology:
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S. Liu*, M. Westbury, N. Dussex, K. Mitchel, M. Sinding, P. Heintzman, D. Duchêne, J. Kapp, J. Seth, et al., 2021. Ancient and modern genomes unravel the evolutionary history of the rhinoceros family, Cell, 184, 1-12
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T. Valk, P. Patrícia, D. David, B. Anders, O. Jonas, H. Stefanie, X. Georgios, et al. 2021. Million-Year-Old DNA Sheds Light on the Genomic History of Mammoths. Nature 591 (7849): 265–69.
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C. Yang, Y. Zheng, S. Tan, G. Meng, W. Rao, C. Yang, D. Bourne, ……, and S. Liu*. 2020. Efficient COI Barcoding Using High Throughput Single-End 400 Bp Sequencing. BMC Genomics 21 (1): 862.
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Z. Nolen, Y. Burcin, I. Iker, S. Liu, G. Clara, B. Daniel, M. Frieder, T. Gilbert, and R. Pereira. 2020. Historical Isolation Facilitates Species Radiation by Sexual Selection: Insights from Chorthippus Grasshoppers. Molecular Ecology, no. October: 4985–5002.
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Y. Ji, X. Li, T. Ji, J. Tang, L. Qiu, J. Hu, J. Dong, et al. 2020. Gene Reuse Facilitates Rapid Radiation and Independent Adaptation to Diverse Habitats in the Asian Honeybee. Science Advances 6 (51).
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A. Margaryan, M. Sinding, S. Liu, F. Vieira, Y. Chan, S. Nathan, Y. Moodley, M. Bruford, and M. Gilbert. 2020. Recent Mitochondrial Lineage Extinction in the Critically Endangered Javan Rhinoceros. Zoological Journal of the Linnean Society, March, 1–12.
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Y. Zhang, Y. Zhong, Y. Hong, Y. Xue, D. Li, C. Zhou, and S. Liu*. 2019. RAD-Seq data advance captive-based conservation of wild Bactrian camels (Camelus ferus). Conservation Genetics 20: 817-824.
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E. Cappellini, F. Welker, L. Pandolfi, J. Ramos-Madrigal, D. Samodova, P. L Rüther, A. K Fotakis, et al. 2019. Early Pleistocene Enamel Proteome from Dmanisi Resolves Stephanorhinus Phylogeny. Nature 574 (7776): 103–7.
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S. Liu#, C. Yang#, C. Zhou#, and X. Zhou*. 2017. Filling reference gaps via assembling DNA barcodes using high-throughput sequencing – moving toward barcoding the world. GigaScience 6(12): 1-8.
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F. Mitterboeck#, S. Liu#, S. Adamowicz, J. Fu, R. Zhang, W. Song, K. Meusemann, and X. Zhou*. 2017. Positive and relaxed selection associated with flight evolution and loss in insect transcriptomes. GigaScience 6(10): 1-14.
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S. Liu, X. Wang, L. Xie, M. Tan, Z. Li, X. Su, H. Zhang, et al. 2016. Mitochondrial capture enriches mito-DNA 100-fold, enabling PCR-free mitogenomics biodiversity analysis. Molecular Ecology Resources16: 470-479
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B. Misof*, S. Liu, K. Meusemann, R. Peters, A. Donath, C. Mayer, P. B. Frandsen, et al. 2014. Phylogenomics resolves the timing and pattern of insect evolution. Science 346 (6210)
Bioinformatics:
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D. Lang#, S. Zhang#, P. Ren, F. Liang, Z. Sun, G. Meng, Y. Tan, ……. and S. Liu*. 2020. Comparison of the Two Up-to-Date Sequencing Technologies for Genome Assembly: HiFi Reads of Pacific Biosciences Sequel II System and Ultralong Reads of Oxford Nanopore. GigaScience 9 (12): 1–7.
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J. Hu, J. Fan, Z. Sun, and S. Liu*. 2019. NextPolish: a fast and efficient genome polishing tool for long read assembly. Bioinformatics 36(7): 2253-2255.
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G. Meng, Y. Li, C. Yang and S. Liu*. 2019. MitoZ: A toolkit for animal mitochondrial genome assembly, annotation and visualization. Nucleic Acids Research 47(11): e63
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Y. Xie#, G. Wu#, J. Tang#, R. Luo, J. Patterson, S. Liu, W. Huang, et al. 2014. SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads. Bioinformatics 30(12): 1660-1666.
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S. Liu, Y. Li, J. Lu, X. Su, M. Tang, R. Zhang, L. Zhou, et al. 2013. SOAPBarcode: revealing arthropod biodiversity through assembly of Illumina shotgun sequences of PCR amplicons. Methods in Ecology and Evolution 4: 1142-1150.