© 2019 by Xin Zhou

The Zhou lab, China Agricultural University

 
 
 
 
 
 
 
 
 
 
ZHOU PUBLICATIONS

2019

  1. Wipfler, B., W. Koehler, P. Frandsen, A. Donath, S. Liu, R. Machida, B. Misof, R. Peters, S. Shimzu, X. Zhou, and S. Simon. 2019. Phylogenomics changes our understanding about earwig evolution. Systematic EntomologyIn press.

  2. McKenna*#, D. D., S. Shin#, D. Ahrens, M. Balke, C. Beza, D. J. Clarke, A. Donath, H. E. Escalona, F. Friedrich, H. Letsch, S. Liu, D. Maddison, C. Mayer, B. Misof, P. J. Murin, O. Niehuis, R. S. Peters, L. Podsiadlowski, H. Pohl, E. D. Scully, E. V. Yan, X. Zhou, A. Ślipiński, R. G. Beutel. 2019. The evolution and genomic basis of beetle diversity. PNASPDF

  3. Kawahara, A. Y.*, D. Plotkin, M. Espeland, K. Meusemann, E. F.A. Toussaint, A. Donath, F. Gimnich, P. B. Frandsen, A. Zwick, M. dos Reis, J. R. Barber, R. S. Peters, S. Liu, X. Zhou, C. Mayer, L. Podsiadlowski, C. Storer, B. Misof, J. W. Breinholt. 2019. Phylogenomics reveals the evolutionary timing and pattern of butterflies and moths. Proceedings of the National Academy of Sciences 116(45): 22657-22663PDF
    F1000 Recommended

  4. Vizán-Rico, H. I., C. Mayer, M. Petersen, D. McKenna, X. Zhou, and J. Gómez-Zurita*. 2019. Patterns and constraints in the evolution of sperm individualization genes in insects, with an emphasis on beetles. Gene 10(10): 776. PDF

  5. Wang, J., Q. Su, X. Zhang*, C. Li, S. Luo, X. Zhou, and H. Zheng*. 2019. Entomomonas moraniae gen. nov. sp. nov., a member of the Pseudomonadacea family isolated from the Asian honey bee gut possesses a highly reduced genome. International Journal of Systematic and Evolutionary Microbiology. PDF

  6. Simon, S., H. Letsch, S. Bank, T. R. Buckley, A. Donath, S. Liu, R. Machida, K. Meusemann, B. Misof, L. Podsiadlowski, X. Zhou, B. Wipfler, and S. Bradler*. 2019. Old World and New World Phasmatodea: phylogenomics resolve the evolutionary history of stick and leaf insects. Frontiers in Ecology and Evolution 7:345. PDF

  7. Shelomi, M.*, B. Wipfler, X. Zhou, and Y. Pauchet. 2019. Multifunctional cellulase enzymes are ancestral in Polyneoptera. Insect Molecular BiologyPDF 

  8. Smet, Y. De, K. Jordaens, M. Tang, G. Sonet, M. Virgilio, A. D. Young, J. H. Skevington, T. Backeljau, S. Liu, X. Zhou, and M. De Meyer. 2019. Five complete mitochondrial genomes of the hoverfly genus Eristalinus (Diptera: Syrphidae). GenomePDF

  9. Lang, D.#, M. Tang#, J. Hu, and X. Zhou*. 2019. Genome-skimming provides accurate quantification for pollen mixtures. Molecular Ecology Resources 19:1433-1446. PDF

  10. 唐敏,邹怡,周欣*。2019。洞察景观生态影响蜜蜂健康之新视角——肠道微生物。生物多样性 27(5): 516-525。生物多样性基因组学专辑。PDF

  11. 周欣*。2019。运用基因组学方法探究生物多样性:大数据时代的“胡克显微镜”。生物多样性 27(5): 475-479。生物多样性基因组学专辑(编者按)。PDF 
    Cover Story

  12. Seppey, M., P. Ioannidis, B. C. Emerson, C. Pitteloud, M. Robinson-Rechavi, J. Roux, H. E. Escalona, D. D. McKenna, B. Misof, S. Shin, X. Zhou, R. M. Waterhouse*, and N. Alvarez*. 2019. Genomic signatures accompanying the dietary shift to phytophagy in polyphagous beetles. Genome Biology 20: 98. PDF

  13. Adamowicz, S. J.*, J. S. Boatwright, F. Chain, B. L. Fisher, I. D. Hogg, F. Leese, D. A. Lijtmaer, M. Mwale, A. M. Naaum, X. Pochon, D. Steinke, J. J. Wilson, S. Wood, J. Xu, S. Xu, X. Zhou, and M. Van der Bank. 2019. Trends in DNA barcoding and metabarcoding. Genome 62(3): v–viii. PDF

  14. Vasilikopoulosa, A.*, M. Balke, R. G. Beutel, A. Donath, L. Podsiadlowski, J. M. Pflug, R. M. Waterhouse, K. Meusemann, R. S. Peters, H. E. Escalona, C. Mayer, S. Liu, L. Hendrich, Y. Alarie, D. T. Bilton, F. Jia, X. Zhou, I. Ribera, D. R. Maddison, O. Niehuis, B. Misof*. 2019. Phylogenomics of the superfamily Dytiscoidea (Coleoptera: Adephaga) with an empirical evaluation of phylogenetic conflict and systematic error. Molecular Phylogenetics and Evolution 135: 270-285. PDF

  15. Evangelista, D. A.*#, B. Wipfler*#, O. Béthoux, A. Donath, M. Fujita, M. K. Kohli, J. Korb, F. Legendre, S. Liu, R. Machida, B. Misof, R. S. Peters, L. Podsiadlowski, J. Rust, K. Schuette, W. Tollenaar, J. L. Ware, X. Zhou, K. Meusemann, S. Simon*. 2019. An integrative phylogenomic approach illuminates the evolutionary history of cockroaches and termites (Blattodea). Proceedings of the Royal Society B: Biological Sciences 286(1895): 20182076. PDF

  16. Kutty, S. N., K. Meusemann, K. M. Bayless, M. A. T. Marinho, A. C. Pont, X. Zhou, B. Misof, B. M. Wiegmann, D. Yeates, P. Cerretti, R. Meier*, and T. Pape*. 2019. Phylogenomic analysis of Calyptratae: resolving the phylogenetic relationships within a major radiation of Diptera. CladisticsPDF

  17. Wipfler, B.*#, H. Letsch#, P. B. Frandsen#, P. Kapli#, C. Mayer#, D. Bartel, T. R. Buckley, A. Donath, J. S. Edgerly-Rooks, M. Fujita, S. Liu, R. Machida, Y. Mashimo, B. Misof, O. Niehuis, R. S. Peters, M. Petersen, L. Podsiadlowski, K. Schütte, S. Shimizu, T. Uchifune, J. Wilbrandt, E. Yan, X. Zhou, and S. Simon*#. 2019. Evolutionary history of Polyneoptera and its implications for our understanding of the early evolution of winged insects. Proceedings of the National Academy of Sciences 116(8): 3024-3029. PDF
    PNAS Commentary 
    F1000 Recommended

  18. Zhang, F.*, C. Zhu, X. Zhou, S. Scheu, Y. Luan*. 2019. Phylogenomics from low-coverage whole-genome sequencing. Methods in Ecology and Evolution 10(4): 507-517. PDF

2018

  1. Johnson, K. P.*, C. H. Dietrich, F. Friedrich, R. G. Beutel, B. Wipfler, R. S. Peters, J. M. Allen, M. Petersen, A. Donath, K. K. O. Walden, A. M. Kozlov, L. Podsiadlowski, C. Mayer, K. Meusemann, A. Vasilikopoulos, R. M. Waterhouse, S. L. Cameron, C. Weirauch, D. R. Swanson, D. M. Percy, N. B. Hardy, I. Terry, S. Liu, X. Zhou, B. Misof, H. M. Robertson, and K. Yoshizawa. 2018. Phylogenomics and the evolution of hemipteroid insects. Proceedings of the National Academy of Sciences 115(50): 12775-12780. PDF
    EurekAlert

  2. Luo, S., M. Tang, P. B. Frandsen, R. J. Stewart, and X. Zhou*. 2018. The genome of an underwater architect, the caddisfly Stenopsyche tienmushanensis Hwang (Insecta: Trichoptera). GigaScience 7(12):giy143. PDF
    Dataset

  3. Lang, D.#, M. Tang#, J. Hu, and X. Zhou*. 2018. Genome-skimming provides accurate quantification for pollen mixtures. bioRxiv (Preprint). PDF

  4. Seppey, M., P. Ioannidis, B. C. Emerson, C. Pitteloud, M. Robinson-Rechavi, J. Roux, H. E. Escalona, D. D. McKenna, B. Misof, S. Shin, X. Zhou, R. M. Waterhouse, and N. Alvarez. 2018. Genomic signatures accompanying the dietary shift to phytophagy in polyphagous beetles. bioRxiv:1–27 (Preprint). PDF

  5. Gillung, J. P., S. L. Winterton, K. M. Bayless, Z. Khouri, M. L. Borowiec, D. Yeates, L. S. Kimsey, B. Misof, S. Shin, X. Zhou, C. Mayer, M. Petersen, and B. M. Wiegmann. 2018. Anchored phylogenomics unravels the evolution of spider flies (Diptera, Acroceridae) and reveals discordance between nucleotides and amino acids. Molecular Phylogenetics and Evolution 128: 233-245. PDF

  6. 郎丹丹,唐敏,周欣*。2018。传粉网络构建的定性定量分子研究:应用与展望。生物多样性 26(5): 445-456。PDF
    Cover Story

  7. 李晨伊,周欣,郑浩*。2018。蜜蜂肠道微生物群落研究进展。微生物学报 58(6): 1016-1024。PDF
    Cover Story

  8. Barth, M. B., K. Buchwalder, A. Y. Kawahara, X. Zhou, S. Liu, N. Krezdorn, B. Rotter, R. Horres, and A. K. Hundsdoerfer*. 2018. Functional characterization of the first de novo transcriptome of a Macroglossinae hawkmoth, Hyles euphorbiae, reveals strong expression of phorbol ester detoxification and seasonal cold hardiness genes. Frontiers in Zoology 15:20. PDF

  9. Bista, I.*, G. R. Carvalho, M. Tang, K. Walsh, X. Zhou, M. Hajibabaei, S. Shokralla, D. Bradley, S. Liu, M. Christmas, and S. Creer*. 2018. Performance of amplicon and shotgun sequencing for accurate biomass estimation in invertebrate community samples. Molecular Ecology Resources 18(5): 1020-1034. PDF
    MER Editorial Pick

  10. Wang, X.#, P. Wang#, R. Wang, C. Wang, J. Bai, C. Ke, D. Yu, K. Li, Y. Ma, H. Han, Y. Zhao, X. Zhou*, and L. Ren*. 2018. Analysis of TCRβ and TCRγ genes in Chinese alligator provides insights into the evolution of TCR genes in jawed vertebrates. Developmental and Comparative Immunology 85: 31-43. PDF

  11. Pauli, T.*, T. O. Burt, K. Meusemann, K. Bayless, A. Donath, L. Podsiadlowski, C. Mayer, A. Kozlov, A. Vasilikopoulos, S. Liu, X. Zhou, D. Yeates, B. Misof, R. S. Peters, and X. Mengual*. 2018. New data, same story: phylogenomics does not support Syrphoidea (Diptera: Syrphidae, Pipunculidae). Systematic Entomology 43(3):447-459PDF

  12. Zhou, C., S. Liu, W. Song, S. Luo, G. Meng, C. Yang, H. Yang, J. Ma, L. Wang, S. Gao, J. Wang, H. Yang, Y. Zhao*, H. Wang*, and X. Zhou*. 2018. Characterization of viral RNA splicing using whole-transcriptome datasets from host species. Scientific Reports 8:3273. PDF 

  13. Guo, X. K., J. Ou, S. Liang, X. Zhou and X. Hu*. 2018. Epithelial Hes1 maintains gut homeostasis by preventing microbial dysbiosis. Mucosal Immunology 11: 716-726. PDF

  14. Chialvo, C. H. S.*, P. Chialvo, J. D. Holland, T. J. Anderson, J. W. Breinholt, A. Y. Kawahara, X. Zhou, S. Liu, and J. M. Zaspel. 2018. A phylogenomic analysis of lichen-feeding tiger moths uncovers evolutionary origins of host chemical sequestration. Molecular Phylogenetics and Evolution 121: 23-34PDF

  15. Peters*, R. S., O. Niehuis, S. Gunkel, M. Bläser, C. Mayer, L. Podsiadlowski, A. Kozlov, A. Donath, K. Meusemann, S. van Noort, S. Liu, X. Zhou, B. Misof, J. Heraty, and L. Krogmann*. 2018. Transcriptome sequence-based phylogeny of chalcidoid wasps (Hymenoptera: Chalcidoidea) reveals a history of rapid radiations, convergence, and evolutionary success. Molecular Phylogenetics and Evolution 120: 286-296. PDF

2017

  1. Li, Y., R. Zhang, S. Liu, A. Donath, R. S. Peters, J. Ware, B. Misof, O. Niehuis, M. E. Pfrender*, and X. Zhou*. 2017. The molecular evolutionary dynamics of Oxidative Phosphorylation (OXPHOS) genes in Hymenoptera. BMC Evolutionary Biology 17:269. PDF

  2. 朱朝东*,罗世孝,周欣,陈华燕,张冠阳。2017。地球生物基因组计划与生物分类学。生物多样性 25(11):1251-1254。PDF

  3. 侯丽,詹帅,周欣,李飞,王宪辉*。2017。中国昆虫基因组学的研究进展。应用昆虫学报 54(5):693-704。PDF

  4. Liu, S.#, C. Yang#, C. Zhou#, and X. Zhou*. 2017. Filling reference gaps via assembling DNA barcodes using high-throughput sequencing – moving toward barcoding the world. GigaScience 6(12): 1-8. PDF

  5. 郜恒骏主编。2017。《中国生物样本库-理论与实践》。北京:科学出版社。ISBN:978-7-03-051888-0。786页。(主要编写人员之一)。

  6. Bank, S.#, M. Sann#, C. Mayer, K. Meusemann, A. Donath, L. Podsiadlowski, A. Kozlov, M. Petersen, L. Krogmann, R. Meier, P. Rosa, T. Schmitt, M. Wurdack, S. Liu, X. Zhou, B. Misof, R. S. Peters*, and O. Niehuis*. 2017. Transcriptome and target DNA enrichment sequence data provide new insights into the phylogeny of vespid wasps (Hymenoptera: Aculeata: Vespidae). Molecular Phylogenetics and Evolution 116: 213-226. PDF

  7. Mitterboeck, T. F.#, S. Liu#, S. J. Adamowicz, J. Fu, R. Zhang, W. Song, K. Meusemann, and X. Zhou*. 2017. Positive and relaxed selection associated with flight evolution and loss in insect transcriptomes. GigaScience 6(10): 1-14. PDF

  8. Peters, R. S. *, L. Krogmann, C. Mayer, A. Donath, S. Gunkel, K. Meusemann, A. Kozlov, L. Podsiadlowski, M. Petersen, R. Lanfear, P. A. Diez, J. Heraty, K. M. Kjer, S. Klopfstein, R. Meier, C. Polidori, T. Schmitt, S. Liu, X. Zhou, T. Wappler, J. Rust, B. Misof, and O. Niehuis*. 2017. Evolutionary history of the Hymenoptera. Current Biology 27(7):1013-1018. PDF
    F1000 Recommended Cover Story
    Dataset

  9. Voolstra, C. R., GIGA Community of Scientists (Marcin Adamski, Shobhit Agrawal, Agostinho Antunes, Manuel Aranda, Andy Baxevanis, Mark Blaxter, Thomas Bosch, Heather Bracken-Grissom, Jonathan Coddington, Timothy Collins, Keith Crandall, Mikael Dahl, Daniel Distel, Casey Dunn, Michael Eitel, Jean-Francois Flot, Gonzalo Giribet, Fabrizio Ghiselli, Steven H. D. Haddock, Kevin Kocot, Yi Jin Liew, Audrey Majeske, Bernhard Misof, Christopher Mungal, Stephen J. O’Brien, Timothy Ravasi, Mauro de Freitas Rebelo, Ana Riesgo, Christine Schnitzler, Anja Schulze, Billie Swalla, Denis Tagu, Robert Toonen, Marcela Uliano da Silva, Sergio Vargas, Xin Zhou), G. Wörheide*, and J. V. Lopez*. 2017. Advancing Genomics through the Global Invertebrate Genomics Alliance (GIGA). Invertebrate Systematics 31:1-7. PDF

  10. Petersen, M. *, K. Meusemann, A. Donath, D. Dowling, S. Liu, R. Peters, L. Podsiadlowski, A. Vasilikopoulos, X. Zhou, B. Misof, and O. Niehuis*. 2017. Orthograph: a versatile tool for mapping coding nucleotide sequences to clusters of orthologous genes. BMC Bioinformatics 18: 111. PDF

  11. 蔡邦华著。2017。《昆虫分类学-修订版》。蔡晓明,黄复生修订。修订委员会:主任尹文英;副主任程家安,彩万志,乔格侠,蔡恒胜;委员:彩万志,蔡恒胜,蔡晓明,陈学新,程家安,何俊华,黄复生,李绍文,李兆麟,梁爱萍,乔格侠,苏德明,唐觉,吴燕如,杨定,杨平世,杨星科,殷惠芬,尹文英,袁锋,张雅林,周欣。主编:蔡晓明,黄复生。化学工业出版社。“十二五”国家重点图书。ISBN 978-7-122-25383-5。1149页。

  12. Dowling, D. *, T. Pauli, A. Donath, K. Meusemann, L. Podsiadlowski, M. Petersen, R. S. Peters, C. Mayer, S. Liu, X. Zhou, B. Misof, and O. Niehuis*. 2017. Phylogenetic origin and diversification of RNAi pathway genes in insects. Genome Biology and Evolution 8(12): 3784-3793. PDF

 

2016

  1. Tan, M., R. Zhang, C. Hardman, and X. Zhou*. 2016. Mitochondrial genome of Hylaeus dilatatus (Hymenoptera: Colletidae). Mitochondrial DNA Part A 27(6): 3975-3976. PDF

  2. Pauli, T. *, L. Vedder, D. Dowling, M. Petersen, K. Meusemann, A. Donath, R. S. Peters, L. Podsiadlowski, C. Mayer, S. Liu, X. Zhou, P. Heger, T. Wiehe, L. Hering, G. Mayer, B. Misof, and O. Niehuis*. 2016. Transcriptomic data from panarthropods shed new light on the evolution of insulator binding proteins in insects. BMC Genomics 17:861. PDF

  3. Droege, G. *, K. Barker, O. Seberg, J. Coddington, E. Benson, W. G. Berendsohn, B. Bunk, C. Butler, E. M. Cawsey, J. Deck, M. Doring, P. Flemons, B. Gemeinholzer, A. Guntsch, T. Hollowell, P. Kelbert, I. Kostadinov, R. Kottmann, R. T. Lawlor, C. Lyal, J. Mackenzie-Dodds, C. Meyer, D. Mulcahy, S. Y. Nussbeck, E. O’Tuama, T. Orrell, G. Petersen, T. Robertson, C. Sohngen, J. Whitacre, J. Wieczorek, P. Yilmaz, H. Zetzsche, Y. Zhang, and X. Zhou. 2016. The Global Genome Biodiversity Network (GGBN) Data Standard specification. Database-The Journal of Biological Databases and Curation 2016: baw125. PDF

  4. Frandsen, P. B. *, X. Zhou, O. Flint Jr., and K. M. Kjer. 2016. Using DNA barcode data to add leaves to the Trichoptera tree of life. In Vshivkova, T. S. and J. C. Morse (eds.) Proceedings of the 14th International Symposium on Trichoptera, July 2-7, 2012, Vladivostok, Russia. Zoosymposia 10:193-199. PDF

  5. Kjer, K. M. *, J. Thomas, X. Zhou, P. B. Frandsen, E. Prendini, and R. W. Holzenthal. 2016. Progress on the phylogeny of caddisflies (Trichoptera). In Vshivkova, T. S. and J. C. Morse (eds.) Proceedings of the 14th International Symposium on Trichoptera, July 2-7, 2012, Vladivostok, Russia. Zoosymposia 10:248-256. PDF

  6. Zhou, X. *, P. Frandsen, R. W. Holzenthal, C. R. Beet, K. R. Bennett, R. J. Blahnik, N. Bonada, D. Cartwright, S. Chuluunbat, G. V. Cocks, G. E. Collins, J. deWaard, J. Dean, O. Flint, M. R. Gonzalez, A. Hausmann, L. Hendrich, M. Hess, I. D. Hogg, B. C. Kondratieff, H. Malicky, M. A. Milton, J. Morinière, J. C. Morse, S. Pauls, A. Rinne, J. Robinson, J. Salokannel, M. Shackleton, B. Smith, A. Stamatakis, R. StClair, J. A. Thomas, C. Zamora-Muñoz, T. Ziesmann, and K. M. Kjer*. 2016. The Trichoptera barcode initiative: a strategy for generating a species-level Tree of Life. Philosophical Transactions of the Royal Society B: Biology Science 371 (1702):20160025. PDF
    Cover Story

  7. Zhou. C., M. Tan, S. Du, R. Zhang, R. Machida, and X. Zhou*. 2016. The mitochondrial genome of the winter stonefly Apteroperla tikumana (Plecoptera, Capniidae). Mitochondrial DNA Part A 27(4): 3030-3032. PDF

  8. Tan, M., R. Zhang, C. Xiang, and X. Zhou*. 2016. The complete mitochondrial genome of the pumpkin fruit fly, Bactrocera tau (Diptera: Tephritidae). Mitochondrial DNA Part A 27(4): 2502-2503. PDF

  9. Shelomi, M.*, E. G. J. Danchin, D. Heckel, B. Wipfler, S. Bradler, X. Zhou, and Y. Pauchet. 2016. Horizontal gene transfer of a pectinase from bacteria preceded the diversification of stick and leaf insects. Scientific Reports 6:26388. PDF

  10. Crampton-Platt, A., D. W. Yu, X. Zhou, and A. P. Vogler*. 2016. Mitochondrial metagenomics: letting the genes out of the bottle. GigaScience 5:15. PDF

  11. Derst, C., H. Dircksen, K. Meusemann, X. Zhou, S. Liu, and R. Predel*. 2016. Evolution of neuropeptides in non-pterygote hexapods. BMC Evolutionary Biology 16:51. PDF

  12. Toussaint, E. F. A., R. G. Beutel, J. Morinière, F. Jia, S. Xu, M. C. Michat, X. Zhou, D. T. Bilton, I. Ribera, J. Hájek, and M. Balke*. 2016. Molecular phylogeny of the highly disjunct cliff water beetles from South Africa and China (Coleoptera, Aspidytidae). Zoological Journal of the Linnean Society 176(3): 537-546. PDF

  13. The QUINTESSENCE Consortium (59 authors, D. A. Bohan*, D. Landuyt, A. Ma, S. Macfadyen, V. Martinet, F. Massol, G. McInerny, J. M. Montoya, C. Mulder, U. Pascual, M. J. O. Pocock, P. White, S. Blanchemanche, M. Bonkowski, V. Bretagnolle, C. Brönmark, L. Dicks, A. Dumbrell, N. Friberg, M. O. Gessner, R. J. Gill, C. Gray, A. Haughton, S. Ibanez, J. Jensen, E. Jeppesen, J. Jokela, G. Lacroix, C. Lannou, S. Lavorel, J. L. Galliard, Françoise Lescourret, S. Liu, N. Loeuille, O. McLaughlin, S. Muggleton, J. Peñuelas, T. Petanidou, S. Petit, F. Pomati, D. Raffaelli, J. Rasmussen, A. Raybould, X. Reboud, G. Richard, C. Scherber, S. Scheu, W. J. Sutherland, A. Tamaddoni-Nezhad, C. ter Braak, M. Termansen, M. S. A. Thompson, T. Tscharntke, C. Vacher, H. van der Geest, W. Voigt, J. A. Vonk, X. Zhou, and G. Woodward). 2016. Networking our way to better ecosystem service provision. Trends in Ecology and Evolution 31: 105-115. PDF

  14. Liu, S., X. Wang, L. Xie, M. Tan, Z. Li, X. Su, H. Zhang, B. Misof, K. M. Kjer, M. Tang, O. Niehuis, H. Jiang, and X. Zhou*. 2016. Mitochondrial capture enriches mito-DNA 100 fold, enabling PCR-free mitogenomics biodiversity analysis. Molecular Ecology Resources 16: 470-479. PDF

 

2015

  1. Kjer, K. M., J. L. Ware, J. Rust, T. Wappler, R. Lanfear, L. S. Jermiin, X. Zhou, H. Aspöck, U. Aspöck, R. G. Beutel, A. Blanke, A. Donath, T. Flouri, P. B. Frandsen, P. Kapli, A. Y. Kawahara, H. Letsch, C. Mayer, D. D. McKenna, K. Meusemann, O. Niehuis,R. S. Peters, B. M. Wiegmann, D. K. Yeates,B. M. von Reumont, A. Stamatakis, and B. Misof*. 2015. INSECT PHYLOGENOMICS. Response to comment on "Phylogenomics resolved the timing and pattern of insect evolution". Science 349 (6247): 487-c. PDF

  2. Tang, M.#, C. Hardman#, Y. Ji#, G. Meng, S. Liu, M. Tan, S. Yang, E. Moss, J. Wang, C. Yang, C. Bruce, T. Nevard, S. G. Potts, X. Zhou*, and D. W. Yu*. 2015. High-throughput monitoring of wild bee diversity and abundance via mitogenomics. Methods in Ecology and Evolution 6: 1034-1043. PDF
    Cover Story
    Phys.Org

  3. Qin, J., Y. Zhang*, X. Zhou, X. Kong, S. Wei, R. D. Ward, and A. Zhang*. 2015. Mitochondrial phylogenomics and genetic relationships of closely related pine moth (Lasiocampidae: Dendrolimus) species in China, using whole mitochondrial genomes. BMC Genomics 16: 428. PDF

  4. Gellerer, A., A. Franke, S. Neupert, R. Predel, X. Zhou, S. Liu, W. Reiher, C. Wegener, and U. Homberg*. 2015. Identification and distribution of SIFamide in the nervous system of the desert locust Schistocerca gregaria. Journal of Comparative Neurology 523(1): 108-125. PDF

  5. Kjer, K. * and X. Zhou. 2015. The global Trichoptera Barcode of Life campaign: implications and applications. Scientific abstracts from the 6th International Barcode of Life Conference. Genome 58:238.[Conference abstract].

  6. Mitterboeck, T. F. *, S. Liu, R. Zhang, W. Song, L. Zhou, J. Fu, S. J. Adamowicz, and X. Zhou. 2015. Testing for positive selection in mitochondrial and nuclear energy-related genes in Pterygota insects. Scientific abstracts from the 6th International Barcode of Life Conference. Genome 58:257. [Conference abstract].

  7. Yu, D. W.*, M. Tang, C. J. Hardman, Y. Ji, S. Liu, T. Nevard, S. G. Potts, and X. Zhou. 2015. High-throughtput monitoring of wild bee diversity and abundance via mitogenomics. Scientific abstracts from the 6th International Barcode of Life Conference. Genome 58:299-300. [Conference abstract].

  8. Zhou, X.*, and K. Kjer. 2015. The use of DNA barcoding in large-scale ’omics projects. Scientific abstracts from the 6th International Barcode of Life Conference. Genome 58:302. [Conference abstract].

  9. Fang, X., E. Nevo*, L. Han, E. Levanon, J. Zhao, A. Avivi, D. Larkin, X. Jiang, S. Feranchuk, Y. Zhu, A. Fishman, Y. Feng, N. Sher, Z. Xiong, T. Hankeln, Z. Huang, V. Gorbunova, L. Zhang, W. Zhao, D. E. Wildman, Y. Xiong, A. Gudkov, Q. Zheng, G. Rehavi, S. Liu, L. Bazak, J. Chen, B. A. Knisbacher, Y. Lu, I. Shams, K. Gajda, M. Farré, J. Kim, H. A. Lewin, J. Ma, M. Band, A. Bicker, A. Kranz, T. Mattheus, H. Schmidt, A. Seluanov, J. Azpurua, M. R. McGowen, E. B. Jacob, K. Li, S. Peng, X. Zhu, X. Liao, S. Li, A. Krogh, X. Zhou*, L. Brodsky*, and J. Wang*. 2015. Corrigendum: Genome-wide adaptive complexes to underground stresses in blind mole rats Spalax. Nature Communications 6: 8051. [Corrigendum]. PDF

 

2014

  1. 张勇*,李启沅,王县,周晓琳,魏冬琼,严志祥,王世鹏,钱璞毅,孙啸,万仟,程乐,周欣,汪建*。2014。国家基因库概述。转化医学研究(电子版) 4(4): 111-117. PDF

  2. Kjer, K. M., X. Zhou, P. Frandsen, J. Thomas, and R. J. Blahnik*. 2014. Moving toward species-level phylogeny using ribosomal DNA and COI barcodes: an example from the diverse caddisfly genus Chimarra (Trichoptera: Philopotamidae). Arthropod Systematics and Phylogeny 72(3): 345-354. PDF

  3. Xue, J.#, X. Zhou#, C. Zhang*, L. Yu#, H. Fan, Z. Wang, H. Xu, Y. Xi, Z. Zhu, W. Zhou, P. Pan, B. Li, J. K. Colbourne, H. Noda, Y. Suetsugu, T. Kobayashi, Y. Zheng, S. Liu, R. Zhang, Y. Liu, Y. Luo, D. Fang, Y. Chen, D. Zhan, X. Lv, Y. Cai, Z. Wang, H. Huang, R. Cheng, X. Zhang, Y. Lou, B. Yu, J. Zhuo, Y. Ye, W. Zhang, Z. Shen, H. Yang, J. Wang*, J. Wang*, Y. Bao*, J. Cheng*. 2014. Genomes of the rice pest brown planthopper and its endosymbionts reveal complex complementary contributions for host adaptation. Genome Biology 15:521. PDF

  4. Misof, B.*, S. Liu, K. Meusemann, R. S. Peters, A. Donath, C. Mayer, P. B. Frandsen, J. Ware, T. Flouri, R. G. Beutel, O. Niehuis, M. Petersen, F. Izquierdo-Carrasco, T. Wappler, J. Rust, A. J. Aberer, U. Aspöck, H. Aspöck, A. Blanke, D. Bartel, S. Berger, A. Böhm, T. Buckley, B. Calcott, J. Chen, F. Friedrich, M. Fukui, M. Fujita, C. Greve, P. Grobe, S. Gu, Y. Huang, L. S. Jermiin, A. Y. Kawahara, L. Krogmann, M. Kubiak, R. Lanfear, H. Letsch, Y. Li, Z. Li, J. Li, H. Lu, R. Machida, Y. Mashimo, P. Kapli, D. McKenna, G. Meng, Y. Nakagaki, J. L. Navarrete-Heredia, M. Ott, Y. Ou, G. Pass, L. Podsiadlowski, H. Pohl, B. M. v. Reumont, K. Schütte, K. Sekiya, S. Shimizu, A. Slipinski, A. Stamatakis, W. Song, X. Su, N. U. Szucsich, M. Tan, X. Tan, M. Tang, J. Tang, G. Timelthaler, S. Tomizuka, M. Trautwein, X. Tong, T. Uchifune, M. G. Walzl, B. Wiegmann, J. Wilbrandt, B. Wipfler, T. K. F. Wong, Q. Wu, G. Wu, Y. Xie, S. Yang, Q. Yang, D. K. Yeates, K. Yoshizawa, Q. Zhang, R. Zhang, W. Zhang, Y. Zhang, J. Zhao, C. Zhou, L. Zhou, T. Ziesmann, S. Zou, Y. Li, X. Xu, Y. Zhang, H. Yang, J. Wang, J. Wang*, K. M. Kjer*, and X. Zhou*. 2014. Phylogenomics resolves the timing and pattern of insect evolution. Science 346 (6210): 763-767. PDF
    F1000 Recommended Cover Story
    Nat. Rev. Gen., Science, ScienceNewsWIRED

  5. Tang, M., M. Tan, G. Meng, S. Yang, X. Su, S. Liu, W. Song, Y. Li, Q. Wu, A. Zhang, and X. Zhou*. 2014. Multiplex sequencing of pooled mitochondrial genomes – a crucial step toward biodiversity analysis using mito-metagenomics. Nucleic Acids Research 42(22): e166. PDF

  6. Fang, X.#, I. Seim#, Z. Huang, M. V. Gerashchenko, Z. Xiong, A. A. Turanov, Y. Zhu, A. V. Lobanov, D. Fan, S. H. Yim, X. Yao, S. Ma, L. Yang, S. Lee, E. B. Kim, R. T. Bronson, R. Sumbera, R. Buffenstein, X. Zhou, A. Krogh, T. J. Park, G. Zhang, J. Wang*, and V. N. Gladyshev*. 2014. Adaptations to a subterranean environment and longevity revealed by the analysis of mole rat genomes. Cell Reports 8(5): 1354-1364. PDF

  7. Pan, W. *, Z. Lü, X. Zhu, D. Wang, H. Wang, Y. Long, D. Fu, and X. Zhou. 2014. A chance for lasting survival, ecology and behavior of wild giant pandas. Eds. W. J. McShea, R. B. Harris, D. Garshelis, and D. Wang. Smithsonian Institution Scholarly Press. Washington D.C. 370pp. ISBN 978-1-935623-17-5. [Book chapter].

  8. Zhou, Y.#, P. B. Pope#, S. Li, B. Wen, F. Tan, S. Cheng, J. Chen, J. Yang, F. Liu, X. Lei, Q. Su, C. Zhou, J. Zhao, X. Dong, T. Jin, X. Zhou, S. Yang, G. Zhang, H. Yang, J. Wang, R. Yang*, V. G. H. Eijsink*, and J. Wang*. 2014. Omics-based interpretation of synergism in a soil-derived cellulose-degrading microbial community. Scientific Reports 4:5288. PDF

  9. Fang, X., E. Nevo*, L. Han, E. Levanon, J. Zhao, A. Avivi, D. Larkin, X. Jiang, S. Feranchuk, Y. Zhu, A. Fishman, Y. Feng, N. Sher, Z. Xiong, T. Hankeln, Z. Huang, V. Gorbunova, L. Zhang, W. Zhao, D. E. Wildman, Y. Xiong, A. Gudkov, Q. Zheng, G. Rehavi, S. Liu, L. Bazak, J. Chen, B. A. Knisbacher, Y. Lu, I. Shams, K. Gajda, M. Farré, J. Kim, H. A. Lewin, J. Ma, M. Band, A. Bicker, A. Kranz, T. Mattheus, H. Schmidt, A. Seluanov, J. Azpurua, M. R. McGowen, E. B. Jacob, K. Li, S. Peng, X. Zhu, X. Liao, S. Li, A. Krogh, X. Zhou*, L. Brodsky*, and J. Wang*. 2014. Genome-wide adaptive complexes to underground stresses in blind mole rats Spalax. Nature Communications 5: 3966. PDF

  10. Xie, Y.#, G. Wu#, J. Tang#, R. Luo#, J. Patterson, S. Liu, W. Huang, G. He, S. Gu, S. Li, X. Zhou, Y. Li, X. Xu, G. K. Wong*, and J. Wang*. 2014. SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads. Bioinformatics 30(12): 1660-1666. PDF

  11. GIGA Community of Scientists (J. Lopez*, H. Bracken-Grissom, A. Collins, K. Crandall, D. Distel, C. Dunn, G. Giribet, S. Haddock, N. Knowlton, M. Martindale, M. Medina, C. Messing, S. O’Brien, G. Paulay, N. Putnam, T. Ravasi, G. Rouse, J. Ryan, N. Schulze, G. Wörheide, M. Adamska, C. Voolstra, X. Bailley, J. Breinholt, N. Evans, W. Browne, M. Diaz, N. Fogarty, M. Johnston, T. Laberge, A. Kawahara, D. Lavrov, F. Michonneau, B. Kamel, L. Moroz, T. Oakley, S. Pomponi, M. Rodriguez-Lanetty, S. Santos, N. Satoh, R. Thacker, Y. van der Peer, J. Winston, and X. Zhou). 2014. The Global Invertebrate Genomics Alliance (GIGA): developing community resources to study diverse invertebrate genomes. Journal of Heredity 105(1): 1-18. PDF
    Cover Story

 

2013

  1. Astrin, J. J.*, X. Zhou, and B. Misof. 2013. The importance of biobanking in molecular taxonomy, with proposed definitions for vouchers in a molecular context. In: de Meyer M, Jordaens K, Nagy ZT, Backeljau T (Eds) DNA barcoding: a practical tool for fundamental and applied biodiversity research. Zookeys 365: 67-70. PDF

  2. Balke, M.*, L. Hendrich, E. F. A. Toussaint, X. Zhou, T. von Rintelen, and M. de Bruyn. 2013. Suggestions for a molecular biodiversity assessment of South East Asian freshwater invertebrates. Lessons from the megadiverse beetles (Colecoptera). Journal of Limnology 72(s2): 61-68. PDF

  3. 唐敏,伊廷双,王欣,谭美华,周欣*。2013。Metabarcoding技术在植物鉴定和多样性研究中的应用。植物分类与资源学报 35(6): 769-773。PDF

  4. Stoev, P.*, A. Komerički, N. Akkari, S. Liu, X. Zhou, A. Weigand, J. Hostens, C. Hunter, S. Edmunds, D. Porco, M. Zapparoli, T. Georgiev, D. Mietchen, D. Roberts, S. Faulwetter, V. Smith, and L. Penev. 2013. Eupolybothrus cavernicolus Komerički & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae): the first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data. Biodiversity Data Journal 1: e1013. PDF

  5. Liu, S., Y. Li, J. Lu, X. Su, M. Tang, R. Zhang, L. Zhou, C. Zhou, Q. Yang, Y. Ji, D. W. Yu, and X. Zhou*. 2013. SOAPBarcode: revealing arthropod biodiversity through assembly of Illumina shotgun sequences of PCR amplicons. Methods in Ecology and Evolution 4: 1142-1150. PDF

  6. i5K Consortium (Evans, J. D.*, S. J. Brown, K. J. Hackett, G. Robinson, S. Richards, D. Lawson, C. Elsik, J. Coddington, O. Edwards, S. Emrich, T. Gabaldon, M. Goldsmith, G. Hanes, B. Misof, M. Muñoz-Torres, O. Niehuis, A. Papanicolaou, M. Pfrender, M. Poelchau, M. Purcell-Miramontes, H. M. Robertson, O. Ryder, D. Tagu, T. Torres, E. Zdobnov, G. Zhang, and X. Zhou). 2013. The i5K Initiative: Advancing Arthropod Genomics for Knowledge, Human Health, Agriculture and the Environment. Journal of Heredity 104(5): 595-600. PDF
    Cover Story

  7. Zhou, X.*, Y. Li, S. Liu, Q. Yang, X. Su, L. Zhou, M. Tang, R. Fu, J. Li, and Q. Huang. 2013. Ultra-deep sequencing enables high-fidelity recovery of biodiversity for bulk arthropod samples without PCR amplification. GigaScience 2:4.  PDF
    TheScientist, GigaBlog, Phys.Org​, GigaScience Editorial

  8. Ruiter, D. E., E. E. Boyle, and X. Zhou*. 2013. DNA barcoding facilitates associations and diagnoses for Trichoptera larvae of the Churchill (Manitoba, Canada) area. BMC Ecology 13:5. PDF

  9. You, M.#*, Z. Yue#, W. He#, X. Yang#*, G. Yang#, M. Xie#, D. Zhan, S. W. Baxter, L. Vasseur, G. M. Gurr, C. J. Douglas, J. Bai, P. Wang, K. Cui, S. Huang, X. Li, Q. Zhou, Z. Wu, Q. Chen, C. Liu, B. Wang, X. Li, X. Xu, C. Lu, M. Hu, J. W. Davey, S. M. Smith, M. Chen, X. Xia, W. Tang, F. Ke, D. Zheng, Y. Hu, F. Song, Y. You, X. Ma, L. Peng, Y. Zheng, Y. Liang, Y. Chen, L. Yu, Y. Zhang, Y. Liu, G. Li, L. Fang, J. Li, X. Zhou, Y. Luo, C. Gou, J. Wang, J. Wang, H. Yang, J. Wang*. 2013. A heterozygous moth genome provides insights into herbivory and detoxification. Nature Genetics 45(2): 220-225. PDF

 

2012

  1. Hernández-Triana, L. M.*, J. L. Crainey, A. Hall, F. Fatih, J. Mackenzie-Dodds, A. J. Shelley, X. Zhou, R. J. Post, T. R. Gregory, and P. D. N. Hebert. 2012. DNA barcodes reveal cryptic genetic diversity within the blackfly subgenus Trichodagmia Enderlein (Diptera: Simuliidae: Simulium) and related taxa in the New World. Zootaxa 3514: 43–69. PDF

  2. Harvey, L. E., C. J. Geraci, J. L. Robinson, J. C. Morse*, K. M. Kjer, and X. Zhou. 2012. Diversity of mitochondrial and larval morphology characters in the genus Diplectrona (Trichoptera: Hydropsychidae) in the eastern United States. Terrestrial Arthropod Reviews 5(3-4):191-211. PDF

  3. Webb, J. M.*, L. M. Jacobus, D. H. Funk, X. Zhou, B. Kondratieff, C. J. Geraci, R. E. DeWalt, D. J. Baird, B. Richard, I. Phillips, and P. D. N. Hebert. 2012. A DNA barcode library for North American Ephemeroptera: progress and prospects. PLoS ONE 7(5): e38063. PDF

  4. Smith, M. A.*, C. Bertrand, K. Crosby, E. S. Eveleigh, J. Fernandez-Triana, B. L. Fisher, J. Gibbs, M. Hajibabaei, W. Hallwachs, K. Hind, J. Hrcek, D. Huang, M. Janda, D. H. Janzen, Y. Li, S. Miller, L. Packer, D. Quicke, S. Ratnasingham, J. Rodriguez, R. Rougerie, M. R. Shaw, C. Sheffield, J. K. Stahlhut, D. Stienke, J. B. Whitfield, M. Wood, and X. Zhou. 2012. Wolbachia and DNA barcoding insects: patterns, potential, and problems. PLoS ONE 7(5): e36514. PDF

  5. Curry, C. J.*, X. Zhou, and D. J. Baird. 2012. Congruence of biodiversity measures among larval dragonflies and caddisflies from three Canadian rivers. Freshwater Biology 57(3): 628-639. PDF

 

2011

  1. Shokralla, S.*, X. Zhou, D. Janzen, W. Hallwachs, J-F Landry, L. M. Jacobus, and M. Hajibabaei. 2011. Pyrosequencing for mini-barcoding of fresh and old museum specimens. PLoS ONE 6(7): e21252. PDF

  2. Hajibabaei, M.*, S. Shokralla, X. Zhou, G. A. C. Singer, and D. . Baird. 2011. Environmental barcoding: a next-generation sequencing approach for biomonitoring applications using river benthos. PLoS ONE 6(4): e17497. PDF
    F1000 Recommended

  3. Zhou, X.*, J. L. Robinson, C. J. Geraci, C. R. Parker, O. S. Flint, Jr., D. Etnier, D. Ruiter, R. E. DeWalt, L. M. Jacobus, and P. D. N. Hebert. 2011. Accelerated construction of a regional DNA barcode reference library: caddisflies (Trichoptera) in the Great Smoky Mountains National Park. Freshwater Science 30(1): 131-162. PDF

  4. Baird, D. J.*, T. J. Pascoe, X. Zhou, and M. Hajibabaei. 2011. Building freshwater macroinvertebrate DNA-barcode libraries from reference collection material: formalin preservation versus specimen age. Freshwater Science 30(1): 125-130. PDF

  5. Geraci, C. J.*, M. A. Al-Saffar, and X. Zhou. 2011. DNA barcoding facilitates description of unknown faunas: a case study on Trichoptera in the headwaters of the Tigris River, Iraq. Freshwater Science 30(1): 163-173. PDF

 

2010

  1. Pauls, S. U.*, R. J. Blahnik, X. Zhou, C. T. Wardwell, and R. W. Holzenthal. 2010. DNA barcode data confirm new species and reveal cryptic diversity in Chilean Smicridea (Smicridea) (Trichoptera: Hydropsychidae). Freshwater Science  29(3): 1058-1074. PDF

  2. Geraci, C. J.*, X. Zhou*, J. C. Morse, and K. M. Kjer. 2010. Defining the genus Hydropsyche (Trichoptera: Hydropsychidae) based on DNA and morphological evidence. Freshwater Science 29(3): 918-933. PDF

  3. Zhou, X.*, L. M. Jacobus, R. E. DeWalt, S. J. Adamowicz, and P. D. N. Hebert. 2010. Ephemeroptera, Plecoptera, and Trichoptera fauna of Churchill (Manitoba, Canada): insights into biodiversity patterns from DNA barcoding. Freshwater Science 29(3): 814-837. PDF

  4. Li, Y., X. Zhou, G. Feng, H. Hu, L. Niu, P. D. N. Hebert, and D. Huang*. 2010. COI and ITS2 sequences delimit species, reveal cryptic taxa and host specificity of fig associated Sycophila (Hymenoptera, Eurytomidae). Molecular Ecology Resources 10: 31-40. PDF

 

2009

  1. Zhou, X.*, S. J. Adamowicz, L. M. Jacobus, R. E. DeWalt, and P. D. N. Hebert. 2009. Towards a comprehensive barcode library for arctic life—Ephemeroptera, Plecoptera, and Trichoptera of Churchill, Manitoba, Canada. Frontiers in Zoology 6:30. PDF

  2. Zhou, X.* 2009. The larvae of Chinese Hydropsychidae (Insecta: Trichoptera), Part I: Arctopsyche shimianensis, Parapsyche sp. A, and Diplectrona obscura. Zootaxa 2174: 1-17. PDF

 

2008

  1. Zhou, X.*, L. M. Jacobus, and P. D. N. Hebert. 2008. DNA barcoding North American mayflies – a call for international collaboration. The Mayfly Newsletter 15 (2): 1-3. PDF

  2. Zhou, X.*, K. M. Kjer, and J. C. Morse. 2008. An introduction to the species delimitation and larval-adult association of Chinese Hydropsychidae using independent DNA sequences and adult morphology. pp. 355-368. In Bueno-Soria, J., R. Barba-Álvarez, and B. Armitage (eds.) Proceedings of the 12th International Symposium on Trichoptera, June 18-22, 2006, Mexico City, Mexico. The Caddis Press. [Conference proceedings]. PDF

 

2007

  1. Zhou, X.*, K. M. Kjer, and J. C. Morse. 2007. Associating larvae and adults of Chinese Hydropsychidae (Insecta: Trichoptera) using DNA sequences. Freshwater Science 26(4): 719-742. PDF

  2. Zhou, X.*  2007. The larvae of Chinese Hydropsychidae (Insecta: Trichoptera): delimiting species boundaries using morphology and DNA sequences. Ph.D. dissertation. Rutgers University, New Jersey, USA. 249pp. [Ph. D. dissertation]. PDF

 

2001

  1. 周欣*,孙路,潘文石,吕植,倪一农。2001。秦岭南坡蝶类区系研究。北京大学学报(自然科学版),37(4): 454-469。PDF

  2. 潘文石,吕植,朱小健,王大军,王昊,龙玉,付达丽,周欣。2001。 《继续生存的机会》。 北京大学出版社。北京。ISBN 7-301-04720-7。522页。[Book chapter, in Chinese].

2000

  1. 周欣。2000。《森林采伐对尺蛾群落结构及多样性的影响》。硕士论文。北京大学。38页。[Master thesis, in Chinese]. PDF

 

1997

  1. 周欣。1997。《秦岭南坡哺乳动物、鸟类、蝶类生物多样性及区系研究》。学士论文。北京大学。31页。[Undergranduate thesis, in Chinese].